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RE: [NMusers] Cleaning Up After NONMEM

From: Bauer, Robert <Robert.Bauer_at_iconplc.com>
Date: Fri, 8 Jun 2018 21:13:27 +0000

Mark:
You can create a batch file, such as nmfe74_cleanup.bat (or whatever name you wish), with contents such as

call nmfe74.bat %*
del *.set

which will run the original nonmem script (and all arguments are passed with %*), and when done, go on to delete whichever files you wish.



Robert J. Bauer, Ph.D.
Senior Director
Pharmacometrics R&D
ICON Early Phase
820 W. Diamond Avenue
Suite 100
Gaithersburg, MD 20878
Office: (215) 616-6428
Mobile: (925) 286-0769
Robert.Bauer_at_iconplc.com<mailto:Robert.Bauer_at_iconplc.com>
www.iconplc.com<http://www.iconplc.com/>

From: owner-nmusers_at_globomaxnm.com [mailto:owner-nmusers_at_globomaxnm.com] On Behalf Of Bill Denney
Sent: Friday, June 08, 2018 1:49 PM
To: Mark Tepeck
Cc: nmusers_at_globomaxnm.com
Subject: RE: [NMusers] Cleaning Up After NONMEM

Hi Mark,

To totally avoid them, not that I know of (others may know an option that can help there). With PsN, you can use -clean=4, and I think it will remove everything. If you have a run with a problem, you may end up with no information to troubleshoot it, though.

Thanks,

Bill

From: Mark Tepeck <mark.tepeck_at_gmail.com<mailto:mark.tepeck_at_gmail.com>>
Sent: Friday, June 8, 2018 4:36 PM
To: Bill Denney <wdenney_at_humanpredictions.com<mailto:wdenney_at_humanpredictions.com>>
Cc: nmusers_at_globomaxnm.com<mailto:nmusers_at_globomaxnm.com>
Subject: Re: [NMusers] Cleaning Up After NONMEM

Hi Bill,

Thank you for the tip. Is there anyway to avoid those sub-directories? For example, let NONMEM clean it up automatically? let NONMEM run those temporary files in another cache space invisible to end-users. Those sub-directories increasingly eats a lot of my disk space.

Mark



On Fri, Jun 8, 2018 at 3:56 PM, Bill Denney <wdenney_at_humanpredictions.com<mailto:wdenney_at_humanpredictions.com>> wrote:
Hi Mark,

The simplest answer that I know of is to use PsN (https://uupharmacometrics.github.io/PsN/<https://uupharmacometrics.github.io/PsN/>). It runs NONMEM in a subdirectory and will only bring the most useful files back into the main directory.

Thanks,

Bill

From: owner-nmusers_at_globomaxnm.com<mailto:owner-nmusers_at_globomaxnm.com> <owner-nmusers_at_globomaxnm.com<mailto:owner-nmusers_at_globomaxnm.com>> On Behalf Of Mark Tepeck
Sent: Friday, June 8, 2018 3:43 PM
To: nmusers_at_globomaxnm.com<mailto:nmusers_at_globomaxnm.com>
Subject: Re: [NMusers] FW: testing nmusers number 12001. Please ignore

Hi All,
Is there any native way for NONMEM to opt out of generating running file/folders. Right now, I use some tools to post clean the NONMEM run directory. However, it will be fantastic to have such a NONMEM built-in option to run "cleanly". Those temporary files and folders create heavy burdens on storing and sharing the results.
Thank you,
Mark
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Received on Fri Jun 08 2018 - 17:13:27 EDT

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