Re: [NMusers] Failure to execute NONMEM from R

From: Bill Denney <bill_at_denney.ws>
Date: Wed, 20 Dec 2017 22:11:26 -0500

Hi Matthew,

Since everything is working when run directly from the command line (cmd), I=
 would guess that it's something like a path issue.

Check your path at the command prompt (type "path") and in RStudio ("Sys.get=
env("PATH")").

Thanks,

Bill

> On Dec 20, 2017, at 21:54, HUI, Ka Ho <matthew.hui_at_link.cuhk.edu.hk> wrote=
:
>
> Dear NMusers,
>
> Recently I need to execute NONMEM 7.4 from Rstudio terminal. I have tried t=
he following scripts:
> `system2(“execute FIT_01.mod”)` =
 #Through PsN, using `system2`
> `shell(“execute FIT_01.mod”)` =
     #Through PsN, using `shell`
> `write(“execute FIT_01.mod”, “FIT_01.bat”)=
`
> `shell(“FIT_01.bat”)` =
            #Through PsN, using `shell` to call a batch file
> `write(“execute FIT_01.mod”, “FIT_01.bat”)=
`
> `shell.exec(“FIT_01.bat”)` =
         #Through PsN, using `shell.exec` to call a batch file
> The above commands, but call through C:/nm74g64/run/nmfe74.bat directly
>
> The above were also tested using the test dataset `CONTROL5`
>
> Results:
> gave me the `running command '"execute FIT_01.mod"' had status 127` warnin=
g without any execution
>
> (2)-(4) gave me the following messages:
> Starting 1 NONMEM executions. 1 in parallel.
> S:1 ..
> All executions started.
> Starting NMTRAN
> NMtran failed. There is no output for model 1. Contents of FMSG:
> Not restarting this model.
> F:1 ..
> execute done
>
> (5) similar to (1) but the status/error code became 107
>
> None of the above has led to a successful NONMEM run. But the above comman=
d lines work when outside R (i.e. through `cmd` +/- PsN)
> Is there anyone experiencing the same issue?
>
> System/software info:
> OS: Windows 10
> NONMEM v7.4
> R3.4.2
> Rstudio v1.1.383
>
> Best regards,
> Matthew Hui
> PhD Student
> School of Pharmacy
> Faculty of Medicine
> The Chinese University of Hong Kong
>

Received on Wed Dec 20 2017 - 22:11:26 EST

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