RE: [NMusers] Gfortran problems in yosemite

From: Adedeji Majekodunmi <majeko_at_hotmail.com>
Date: Mon, 22 Feb 2016 22:27:41 +0000

Thanks for your informative replies. I've managed to fix this problem by un=
installing gfortran 5.2 version and installing the gfortran 4.9.2 and NONM=
EM now runs properly as it should (Thanks to Robert Bauer for the hints). M=
oving forward, I'll take on board all your useful comments.
Kind Regards,
Adedeji

From: E.Olofsen_at_lumc.nl
To: majeko_at_hotmail.com; nmusers_at_globomaxnm.com
Subject: RE: [NMusers] Gfortran problems in yosemite
Date: Mon, 22 Feb 2016 21:12:45 +0000







Hi =
Adedeji,



This could happen if the "temp_dir" folder is present and still contains ou=
tput from a previous run with the previous compiler; the temporary folder=
 may be emptied.



I hope this helps,



Erik




From: owner-nmusers_at_globomaxnm.com [owner-nmusers_at_globomaxnm.com] on behalf=
 of Adedeji Majekodunmi [majeko_at_hotmail.com]

Sent: Monday, February 22, 2016 6:21 PM

To: nmusers_at_globomaxnm.com

Subject: [NMusers] Gfortran problems in yosemite






Hi All, =



I would be most grateful for any assistance with the following issues with =
NONMEM. =
I'm using a mac (2012) and I've just recently upgraded to yosemite. The pro=
blem is that NONMEM has stopped running on my laptop since upgrading. This =
is fairly typical after an upgrade in mac and is usually a problem with gfo=
rtran compatibility which should =
 normally be resolved by uninstalling and re-installing gfortran with the f=
ollowing command: =



sudo rm -r/usr/local/gfortran/usr/local/bin/gfortran =



I've tried re-installing the 5.2 version of gfortran which is compatible wi=
th yosemite (https://gcc.gnu.org/wiki/GFortranBinaries#MacOS). =



I then tried running NONMEM but I'm getting the following errors: =




   =
 WARNINGS AND ERRORS (IF ANY) FOR PROBLEM 1 =
              =
 (WARNING 2) NM-TRAN INFERS THAT THE DATA ARE POPULATION. =
              =
 (WARNING 13) WITH USER-WRITTEN PRED OR $PRED, NM-TRAN CANNOT APPEND THE=

 MDV DATA ITEM. =
Note: The following floating-point exceptions are signalling: IEEE_INVALID_=
FLAG IEEE_DIVIDE_BY_ZERO =
Recompiling certain components =
MUMODEL.f90:67:10: =



       USE FSIZES, ONLY: F_PC,F_PG,F_LVO,F_LVS =
          1 =
Fatal Error: Cannot read module file ‘fsizes.mod’ opened at (1), beca=
use it was created by a different version of GNU Fortran =
compilation terminated. =
PRPNM.f90:58:10: =



       USE PNM_CONFIG, ONLY: PNM_UPAR,M_IDEFD,M_IDEFA,M_EL,M_TQ=
,M_DAC,M_DPC =
          1 =
Fatal Error: Cannot read module file ‘pnm_config.mod’ opened at (1), =
because it was created by a different version of GNU Fortran =
compilation terminated. =
Building NONMEM Executable =
gfortran: error: =
temp_dir/MUMODEL.o: No such file or directory =
gfortran: error: =
temp_dir/PRPNM.o: No such file or directory =

No nonmem execution. =



It appears there are still problems with gfortran. Would anyone be kind eno=
ugh to assist? =



My other question: Is there a way to prevent future upgrades on the mac int=
erfering with NONMEM? =



Kind Regards, =



Adedeji =
PhD student, UCL. =




                                               =

Received on Mon Feb 22 2016 - 17:27:41 EST

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