[NMusers] Re: Error in parallel nonmem - related to file size?

From: Mark Sale <msale_at_nuventra.com>
Date: Wed, 25 Feb 2015 11:53:12 +0000

?Bob,

Thanks very much, setting computers = 2 solved it

Mark


Mark Sale M.D.
Vice President, Modeling and Simulation
Nuventra, Inc. (tm)
2525 Meridian Parkway, Suite 280
Research Triangle Park, NC 27713
Office (919)-973-0383
msale_at_nuventra.com<msale_at_kinetigen.com>
www.nuventra.com<http://www.nuventra.com>



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From: Bauer, Robert <Robert.Bauer_at_iconplc.com>
Sent: Tuesday, February 24, 2015 11:40 PM
To: Mark Sale; nmusers_at_globomaxnm.com
Subject: RE: Error in parallel nonmem - related to file size?

Mark:
You may want to try adding the following
COMPUTERS=2
In the $GENERAL section of your pnm file (even if you are only using one co=
mputer, it won't hurt).

Alternatively, you may try using the -maxlim=3 option on the nmfe73 comma=
nd line, to have all buffer/file activity placed in memory.


Robert J. Bauer, Ph.D.
Vice President, Pharmacometrics, R&D
ICON Development Solutions
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Suite 150
Hanover, MD 21076
Tel: (215) 616-6428
Mob: (925) 286-0769
Email: Robert.Bauer_at_iconplc.com<mailto:Robert.Bauer_at_iconplc.com>
Web: www.iconplc.com<http://www.iconplc.com/>

From: Mark Sale [mailto:msale_at_nuventra.com]
Sent: Tuesday, February 24, 2015 6:26 PM
To: nmusers_at_globomaxnm.com; Bauer, Robert
Subject: Error in parallel nonmem - related to file size?


Dear NMusers (and Bob).

  I'm getting an error running parallel NONMEM, with MPI. It seems that pe=
rhaps the file size is limited to ~10,000 lines, the error I'm getting is:

forrtl: severe (24): end-of-file during read, unit 10, file c:\xxxxxxx\WK1_=
FILE10.



Setting NREC = 10001 works, setting NREC = 10002 gives the above error.=
   Doesn't seem related to the size of the file, just the number of records=
.? Perhaps this is related to the 4 digits assigned for the length of the d=
ata file in FCON (but then why 10001, not 10000)? Anyone know of a work-ar=
ound?



thanks

Mark




Mark Sale M.D.
Vice President, Modeling and Simulation
Nuventra, Inc. (tm)
2525 Meridian Parkway, Suite 280
Research Triangle Park, NC 27713
Office (919)-973-0383
msale_at_nuventra.com<msale_at_kinetigen.com>
www.nuventra.com<http://www.nuventra.com>


?


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Received on Wed Feb 25 2015 - 06:53:12 EST

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